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Volume 8   Issue 1   Year 2013
Matushkin Yu.G., Levitsky V.G., Sokolov V.S., Likhoshvai V.A., Orlov Yu.L.

Yeast Gene Elongation Efficiency Correlates with Nucleosome Formation in 5’-Untranslated Region

Mathematical Biology & Bioinformatics. 2013;8(1):248-257.

doi: 10.17537/2013.8.248.

References

  1. Grantham R, Gautier C, Gouy M, Jacobzone M, Mercier R. Nucl. Acids Res. 1981;9:43-74. doi: 10.1093/nar/9.1.213-b
  2. Post LE, Strycharz GD, Nomura M, Lewis H, Dennis PP. Proc. Natl. Acad. Sci. USA. 1979;76:1697-1701. doi: 10.1073/pnas.76.4.1697
  3. Post LE, Nomura M. J. Biol. Chem. 1980;255:4660-4666.
  4. Ikemura T. In: Genetics and evolution of RNA polymerase, tRNA and ribosomes. Eds. Osawa S., Ozeki H., Uchida H., Yura T. Tokyo: University of Tokyo Press and Amsterdam: Elsevier/North Holland; 1980. P. 519-523.
  5. Bennetzen JL, HallL BD. J. Biol. Chem. 1982;257:3026-3031.
  6. Sharp PM, Li WH. Nucleic Acid Res. 1987;15:1281-1295. doi: 10.1093/nar/15.3.1281
  7. Vladimirov NV, Likhoshvai VA, Matushkin YuG. Correlation of codon biases and potential secondary structures with mRNA translation efficiency in unicellular organisms. Molecular Biology. 2007;41(5):843-850. doi: 10.1134/S0026893307050184
  8. Richmond TJ, Widom J. In: Chromatin Structure and Gene Expression. Eds. Workman J.L. and Elgin S:2nd edn. Oxford, UK: Oxford University Press; 2000.
  9. Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E. Nature. 2009;458(7236):362-366. doi: 10.1038/nature07667
  10. Levitsky VG. Nucl. Acids. Res. 2004;32:346-349. doi: 10.1093/nar/gkh482
  11. Segal E, Fondufe-Mittendorf Y, Chen L, Thastrom A, Field Y, Moore IK, Wang JP, Widom J. Nature. 2006;442(7104):772-778. doi: 10.1038/nature04979
  12. Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. Cell. 2008;132:887-898. doi: 10.1016/j.cell.2008.02.022
  13. Tanaka Y, Nakai K. Genome Inform. 2009;23(1):169-178. doi: 10.1142/9781848165632_0016
  14. Goh WS, Orlov Y, Li J, Clarke ND. PLoS Comput Biol. 2010;6(1):e1000649. doi: 10.1371/journal.pcbi.1000649
  15. Levitsky VG, Katokhin AV, Podkolodnaya OA, Furman DP, Kolchanov NA. Nucl. Acids. Res. 2005;33:67-70. doi: 10.1093/nar/gki049
  16. Reynolds SM, Bilmes JA, Noble WS. PLoS Comput Biol. 2010;6(7):e1000834. doi: 10.1371/journal.pcbi.1000834
  17. Segal E, Widom J. Trends Genet. 2009;25(8):335-343. doi: 10.1016/j.tig.2009.06.002
  18. Lantermann AB, Straub T, Strålfors A, Yuan G-C, Ekwall K, Korber P. Nat. Struct. Mol. Biol. 2010;17(2):251-257. doi: 10.1038/nsmb.1741
Table of Contents Original Article
Math. Biol. Bioinf.
2013;8(1):248-257
doi: 10.17537/2013.8.248
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References

 

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