Russian version English version
Volume 8   Issue 1   Year 2013
Gumenuk A.S., Pozdnichenko N.N., Rodionov I.N., Shpynov S.N.

Formal Analysis of Structures of Nucleotide Chains

Mathematical Biology & Bioinformatics. 2013;8(1):373-397.

doi: 10.17537/2013.8.373.

References

  1. Zipf G, Kingsley G. Selected Studies of the Principle of Relative Frequency in Language. Cambridge (Mass.); 1932. doi: 10.4159/harvard.9780674434929
  2. Sadovskii M.G. Informatsionno-statisticheskii analiz nukleotidnykh posledovatel'nostei (Informational-statistical analysis of nucleotide sequences): Doctoral Thesis in Physics and Mathematics, speciality 03.00.03 – biophysics. Krasnoyarsk; 2004. 394 p. (in Russ.).
  3. Kullback S, Leibler RA. On information and sufficiency. The Annals of Mathematical Statistics. 1951;22(1):79-86. doi: 10.1214/aoms/1177729694
  4. Levenshtein VI. Binary codes capable of correcting deletions, insertions, and reversals. Soviet Physics Doklady. 1966;10:707-710.
  5. Gusev VD, Kosarev IuG, Titkova TN. In: Mashinnye metody obnaruzheniia zakonomernostei (Computational Methods for Finding Regularities): Proceedings of the All-Union Symposium. Novosibirsk; 1976. P. 75-84 (in Russ.).
  6. Gusev VD, Kulichkov VA, Nikulin AE. In: Analiz simvol'nykh posledovatel'nostei (Analysis of Symbolic Sequences). Novosibirsk; 1985. P. 107-122 (in Russ.).
  7. Gusev VD, Nemytikova LA. In: Tretii sibirskii kongress po prikladnoi i industrial'noi matematike (INPRIM-98) (The Third Siberian Congress on Applied and Industrial Mathematics). Novosibirsk: Publishing House of the Mathematical Institute of Siberian Branch of RAS; 1998. P. 115 (in Russ.).
  8. Gusev VD, Miroshnichenko LA, Salomatina NV. In: Materialy Vserossiiskoi konferentsii s mezhdunarodnym uchastiem «Znaniia-Ontologii-Teorii» (Methods for revealing the structural units in symbolic sequences. Interlanguage analogues. In: Proceedings of All-Russian – International Conference “Knowledge – Ontology – Theory”). Novosibirsk: Publishing House of the Mathematical Institute of Siberian Branch of RAS; 2009. V. 2. P. 53-62 (in Russ.).
  9. Belikov SI, Gusev VD, Miroshnichenko LA, Titkova TN. In: Matematicheskaia biologiia i bioinformatika (Mathematical Biology and Bioinformatics): Proceedings of IV International Conference. Pushchino; 2012. P. 52-53 (in Russ.).
  10. Gumeniuk AS, Klikushin IuN, Kobenko VIu, Tsiganenko VN. Algoritmy analiza struktury signalov i dannykh (Algorithms for the analysis of signal and data structure). Omsk; 2010. 272 p. (in Russ.).
  11. Zagoruiko NG. Prikladnye metody analiza dannykh i znanii (Application Methods for Data and Knowledge Analysis). Novosibirsk; 1999. 270 p. (in Russ.).
  12. Mazur M. Kachestvennaia teoriia informatsii (Qualitative Theory of Information). Moscow; 1974. 240 p. (in Russ.).
  13. Gumenjuk A, Kostyshin A, Simonova S. An approach to the research of the structure of linguistic and musical texts. Glottometrics. 2002;3:61-89.
  14. Ventzel ES. Teoriia veroiatnostei (Theory of Probability). Moscow; 1969. 576 p. (in Russ.).
  15. National Center for Biotechnology Information. http://www.ncbi.nlm.nih.gov/nuccore/ (accessed 13 February 2013).
  16. Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA. 1990;87:4576-4579. doi: 10.1073/pnas.87.12.4576
  17. Gumenuk AS, Morozenko EV, Rodionov IN. Vestnik Tomskogo gosudarstvennogo universiteta upravleniia, vychislitel'noi tekhniki i informatiki (Tomsk State University Bulletin). 2011;2:15-24 (in Russ.).
  18. Gumeniuk AS. In: Voennaia tekhnika, vooruzhenie i tekhnologii dvoinogo primeneniia (Military Equipment, Armament and Double-Purpose Technologies): Proc. III International Technological Congress. Omsk: Omsk State Technical University; 2005. Part 2. P. 48-52 (in Russ.).
  19. Gumeniuk AS, Pozdnichenko NN. In: Matematicheskaia biologiia i bioinformatika (Mathematical Biology and Bioinformatics): Proceedings of IV International Conference. Pushchino; 2012. P. 56-57 (in Russ.).
  20. Orlov IuK. In: Chislo i mysl' (Number and Thought). Moscow; 1980. Ή 3. P. 70-105 (in Russ.).
  21. Chajkovskiy JuV. Aktivnyi sviaznyi mir. Opyt teorii evoliutsii zhizni (Active connected universe: At attempt at a life evolution theory). Moscow; 2008. 726 p. (in Russ.).
  22. Gumeniuk AS, Kostyshin AS. In: Kvantitativnaia lingvistika i semantika (Quantitative Linguistics and Semantics): collection of scientific papers. Novosibirsk; 2000. Ή 1. P. 3-18. (in Russ.).
  23. Borodovskii MIu, Pevzner PA. In: Komp'iuternyi analiz geneticheskikh tekstov (Computer Analysis of Genetic Texts). Moscow; 1990. P. 33-80 (in Russ.).
  24. Gumenjuk A, Kostyshin A, Borisov K, Salnikova O. On the acoustic elements of a poem and the formal procedures of their segmentation. In: Glottometrics. Lüdenscheid: RAM-Verl.; 2004. Ή 8. P. 2-67.
  25. Gumeniuk AS, Shpynov SN, Morozenko EV, Rodionov IN. In: Matematicheskaia biologiia i bioinformatika (Mathematical Biology and Bioinformatics): Proceedings of IV International Conference. Pushchino; 2008. P. 123-125 (in Russ.).
Table of Contents Original Article
Math. Biol. Bioinf.
2013;8(1):373-397
doi: 10.17537/2013.8.373
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References

 

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