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Volume 9   Issue 2   Year 2014
The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data

Lunin V.Y., Lunina N.L., Petrova T.E.

Institute of Mathematical Problems of Biology, Russian Academy of Sciences, 4, Institutskaja str., 142290, Pushchino, Moscow Region, Russia

Abstract. The task of reconstructing the image of a single macromolecular object from X-ray diffraction data can be formulated as a task of the reconstruction of the 3D electron density distribution from the magnitudes of its Fourier transform. This task can be reduced to a series of standard X-ray crystallography tasks, namely, the recovery of a periodic function from  its Fourier transform magnitudes (structure factors), which are determined in an X-ray diffraction experiment. In this work, a new approach to the solution of these tasks is suggested which is based on the use of connected binary masks as an approximation of the required electron density distribution. The approach includes the random generation of a great number of connected masks, the selection of the masks that are in agreement with an experimental and a prior information about the object, and the alignment and the averaging of the phase sets of the structure factors that correspond to the selected masks. The averaged phase values together with the experimentally determined magnitudes are used for the calculation of the Fourier synthesis, which is applied for the visualization of the object under study. The approach can be used in studies of both single particles and crystalline species; however, it holds the greatest promise for investigations of single objects. The results of testing the approach are presented. 

Key words: X-ray crystallography, phase problem, XFEL, single particle diffraction.
Table of Contents Original Article
Math. Biol. Bioinf.
doi: 10.17537/2014.9.543
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References Translation into English
Math. Biol. Bioinf.
doi: 10.17537/2015.10.t1

Full text (eng., pdf)


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