Russian version English version
Volume 9   Issue 2   Year 2014
Lunin V.Y., Lunina N.L., Petrova T.E.

The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data

Mathematical Biology & Bioinformatics. 2014;9(2):543-562.

doi: 10.17537/2014.9.543.

References

  1. Krupyanskii YuF, Balabaev NK, Petrova TE, Sinitsyn DO, Gryzlova EV, Tereshkina KB, Abdulnasyrov EG, Stepanov AS, Lunin VYu, Grum-Grzhimailo AN. Femtosecond X-Ray Free-Electron Lasers: A New Tool for Studying Nanocrystals and Single Macromolecules. Russian Journal of Physical Chemistry B. 2014;8(4):445-456. doi: 10.1134/S1990793114040046
  2. Sinitsyn DO, Lunin VYu, Grum-Grzhimailoc AN, Gryzlova EV, Balabaev NK, Lunina NL, Petrova TE, Tereshkina KB, Abdulnasyrov EG, Stepanov AS, Krupyanskii YuF. New Possibilities of X-Ray Nanocrystallography of Biological Macromolecules Based on X-Ray Free-Electron Lasers. Russian Journal of Physical Chemistry B. 2014;8(4):457-463. doi: 10.1134/S1990793114040125
  3. Lunin VY, Lunina NL, Petrova TE, Skovoroda TP, Urzhumtsev AG, Podjarny AD. Low-resolution ab initio phasing: problems and advances. Acta Crystallographica Section D: Biological Crystallography. 2000;56:1223-1232. doi: 10.1107/S0907444900010088
  4. Lunin VY, Urzhumtsev AG, Podjarny A. Ab initio phasing of low-resolution Fourier syntheses. In: International Tables for Crysallography. Vol. F. Second Edition. Ed. Arnold E., Himmel D.M., Rossmann M.G. John Wiley & Sons; 2011. P. 437-442.
  5. Lunin VY, Lunina NL, Urzhumtsev AG. Connectivity properties of high-density regions and ab initio phasing at low resolution. Acta Crystallographica Section D: Biological Crystallography. 2000;56:375-382. doi: 10.1107/S0108767300004633
  6. Bricogne G. Methods and programs for direct-space exploitation of geometric redundancies. Acta Crystallographica Section A: Foundations of Crystallography. 1976;32:832-847. doi: 10.1107/S0567739476001691
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  8. Elser V. Solution of the crystallographic phase problem by iterated projections. Acta Crystallographica Section A: Foundations of Crystallography. 2003;59:201-209. doi: 10.1107/S0108767303002812
  9. Baker D, Krukowski AE, Agard DA. Uniqueness and the ab initio phase problem in macromolecular crystallography. Acta Crystallographica Section D: Biological Crystallography. 1993;49:186-192. doi: 10.1107/S0907444992008801
  10. Lunin VY, Urzhumtsev AG, Skovoroda TP. Direct low-resolution phasing from electron-density histograms in protein crystallography. Acta Crystallographica Section A: Foundations of Crystallography. 1990;46:540-544. doi: 10.1107/S0108767390003464
  11. Lunin VY, Lunina NL. The map correlation coefficient for optimally superposed maps. Acta Crystallographica Section A: Foundations of Crystallography. 1996;52:365-368. doi: 10.1107/S0108767395015868
  12. Lunin VY, Urzhumtsev A, Bockmayr A. Direct phasing by binary integer programming. Acta Crystallographica Section A: Foundations of Crystallography. 2002;58:283-291. doi: 10.1107/S0108767302004002
  13. Murakami S, Nakashima R, Yamashita E, Yamaguchi A. Crystal structure of bacterial multidrug efflux transporter AcrB. Nature. 2002;419:587-593. doi: 10.1038/nature01050
  14. Urzhumtsev A, Afonine PV, Lunin VY, Terwilliger TC, Adams PD. Metrics for comparison of crystallographic maps. Acta Crystallographica Section D: Biological Crystallography. 2014;70:2593-2606. doi: 10.1107/S1399004714016289
  15. Lunin VY, Woolfson MM. Mean phase error and the map correlation coefficient. Acta Crystallographica Section D: Biological Crystallography. 1993;49:530-533. doi: 10.1107/S0907444993005852
  16. Lunin VY, Afonine PV, Urzhumtsev AG. Likelihood-based refinement. I. Irremovable model errors. Acta Crystallographica Section A: Foundations of Crystallography. 2002;58:270-282. doi: 10.1107/S0108767302001046
Table of Contents Original Article
Math. Biol. Bioinf.
2014;9(2):543-562
doi: 10.17537/2014.9.543
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References Translation into English
Math. Biol. Bioinf.
2015;10(Suppl.):t1-t19
doi: 10.17537/2015.10.t1

Full text (eng., pdf)

 

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