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Volume 4   Issue 1   Year 2009
Construction of Extended Dynamical Contact Maps by Molecular-Dynamics Simulation Data

Likhachev I.V., Balabaev N.K.

Institute of Mathematical Problems of Biology of the Russian Academy of Sciences, Pushchino, Moscow Region, 142290

Abstract. The article describes algorithms for the construction of extended dynamical contact maps and the tape of contacts for the analyzing of dynamical molecular systems. This analyzis is based on TAMD program – Trajectory Analyzer of Molecular Dynamics.

Key words: contact maps, analysis of molecular dynamics trajectory, molecular dynamics, analysis of protein structure contacts.


Table of Contents Original Article
Math. Biol. Bioinf.
doi: 10.17537/2009.4.36
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)


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