Русская версия English version   
О журнале
Редакционная коллегия
Правила для авторов
Информация для читателей и авторов
Оглавление текущего номера
Архив
Контакты
Поиск

Отправить статью
 


Том 15   Выпуск 2   Год 2020
Чалей М.Б.1, Тюлько Ж.С.2,3, Кутыркин В.А.4

Исследование структуры кодирования ORF1ab, S, M и N генов коронавирусов

Математическая биология и биоинформатика. 2020;15(2):441-454.

doi: 10.17537/2020.15.441.

Список литературы

  1. Guo Y.R., Cao Q.D., Hong Z.S., Tan Y.Y., Chen S.D., Jin H.J., Tan K.S., Wang D.Y., Yan Y. The origin, transmission and clinical therapies on coronavirus disease 2019 (COVID-19) outbreak – an update on the status. Military Medical Research. 2020;7:11. doi: 10.1186/s40779-020-00240-0
  2. Rukovodstvo po virusologii: Virusy i virusnye infektsii cheloveka i zhivotnykh (Manual on virology: Viruses and viral infections of humans and animals). Ed. L'vov D.K. Moscow; 2013 (in Russ.).
  3. Lai M.M.C., Brayton P.R., Armen R.C., Patton C.D., Pugh C., Stohlman S.A. Mouse hepatitis virus A59: mRNA structure and genetic localization of the sequence divergence from hepatotropic strain MHV-3. Journal of Virology. 1981;39(3):823–834. doi: 10.1128/JVI.39.3.823-834.1981
  4. Lai M.M.C., Baric R.S., Makino S., Keck J.G., Egbert J., Leibowitz J., Stohlman S.A. Recombination between non segmented RNA genomes of murine coronaviruses. Journal of Virology. 1985;56(2):449–456. doi: 10.1128/JVI.56.2.449-456.1985
  5. Yu W.-B., Tang G.-D., Zhang L., Corlett R.T. Decoding the evolution and transmissions of the novel pneumonia coronavirus (SARS-CoV-2 / HCoV-19) using whole genomic data. Zoological Research. 2020;41(3):247−257. doi: 10.24272/j.issn.2095-8137.2020.022
  6. Zhao Z., Li H., Wu X., Zhong Y., Zhang K., Zhang Y.-P., Boerwinkle E., Fu Y.-X. Moderate mutation rate in the SARS coronavirus genome and its implications. BMC Evolutionary Biology. 2004;4:21. doi: 10.1186/1471-2148-4-21
  7. Liu L., Fang Q., Deng F., Wang H., Yi C.E., Ba L., Yu W., Lin R.D., Li T., Hu Z., et al. Natural mutations in the receptor binding domain of spike glycoprotein determine the reactivity of cross-neutralization between palm civet coronavirus and severe acute respiratory syndrome coronavirus. Journal of Virology. 2007;81(9):4694–4700. doi: 10.1128/JVI.02389-06
  8. Cotton M., Watson S.J., Kellam P., Al-Rabeeah A., Makhdoom F.R.C.S. H.Q., Assiri A., Al-Tawfiq J., Alhakeem R., Madani H., AlRabiah F., et al. Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study. Lancet. 2013;382:1993–2002. doi: 10.1016/S0140-6736(13)61887-5
  9. Wang N., Li S.Y., Yang X.L., Huang H.M., Zhang Y.J., Guo H., Luo C.M., Miller M., Zhu G., Chmura A.A., et al. Serological evidence of bat SARS-related coronavirus infection in humans. Virologica Sinica. 2018;33(1):104-107. doi: 10.1007/s12250-018-0012-7
  10. Shchelkanov M.Yu., Popova A.Yu., Dedkov V.G., Akimkin V.G., Maleyev V.V. History of investigation and current classification of coronaviruses (Nidovirales: Coronaviridae). Russian Journal of Infection and Immunity. 2020;10(2):221–246 (in Russ.). doi: 10.15789/2220-7619-HOI-1412
  11. Hogue B.G., Machamer C.E. Coronavirus structural proteins and virus assembly. In: Nidoviruses. Ed. Perlman S. ASM Press, 2007. P. 179–200. doi: 10.1128/9781555815790.ch12
  12. Kim D., Lee J.-Y., Yang J.-S., Kim J.W., Kim V.N., Сhang H. The architecture of SARS-CoV-2 transcriptome. Cell. 2020;181(4):914–921.e10. doi: 10.1016/j.cell.2020.04.011
  13. Schoeman, D., Fielding, B.C. Coronavirus envelope protein: current knowledge. Virology Journal. 2019;16:69. doi: 10.1186/s12985-019-1182-0
  14. Chaley M., Kutyrkin V. Profile-Statistical Periodicity of DNA Coding Regions. DNA Research. 2011;18:353–362. doi: 10.1093/dnares/dsr023
  15. Kutyrkin V.A., Chaley M.B. The Model of Organization of Coding In the Genomes of Prokaryotic Organisms. Mathematical Biology and Bioinformatics. 2016;11(1):24–45. doi: 10.17537/2016.11.24
  16. Chaley M.B., Tyulko Zh.S., Kutyrkin V.A. Flavivirus Species Recognition Based On the Polyprotein Coding Sequences. Mathematical Biology and Bioinformatics. 2019;14(2):533–542. doi: 10.17537/2019.14.533
  17. NCBI SARS-CoV-2 Resources. https://www.ncbi.nlm.nih.gov/sars-cov-2/ (accessed 30.10.2020).
  18. GenBank. https://ftp.ncbi.nlm.nih.gov/genbank/ (accessed 30.04.2020).
  19. Chaley M., Kutyrkin V. Stochastic Models for Description of Structural-Statistical Properties in DNA Sequences. Journal of Theoretical Biology. 2020;496:110126. doi: 10.1016/j.jtbi.2019.110126
  20. Wu F., Zhao S., Yu B., Chen Y.M., Wang W., Song Z.G., Hu Y., Tao Z.W., Tian J.H., Pei Y.Y., Yuan M.L., et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020;579(7798):265–269. doi: 10.1038/s41586-020-2008-3
  21. Stadler K., Masignani V., Eickmann M., Becker S., Abrignani S., Klenk H.D., Rappuoli R. SARS – beginning to understand a new virus. Nature Reviews. Microbiology. 2003;1(3):209–218. doi: 10.1038/nrmicro775
  22. Neuman B.W., Kiss G., Kunding A.H., Bhella D., Baksh M.F., Connelly, S., Droese B., Klaus, J.P., Makino S., Sawicki S.G., Siddell S.G., et al. 2011. A structural analysis of M protein in coronavirus assembly and morphology. Journal of Structural Biology. 2011;174(1):11–22. doi: 10.1016/j.jsb.2010.11.021
  23. Li J.Y., Liao C.H., Wang Q., Tan Y.J., Luo R., Qiu Y., Ge X.Y. The ORF6, ORF8 and nucleocapsid proteins of SARS-CoV-2 inhibit type I interferon signaling pathway. Virus Research. 2020;286:198074. doi: 10.1016/j.virusres.2020.198074
Содержание
Оригинальная статья
Мат. биол. и биоинф.
2020;15(2):441-454
doi: 10.17537/2020.15.441
опубликована на рус. яз.

Аннотация (рус.)
Аннотация (англ.)
Полный текст (рус., pdf)
Список литературы

 
  Copyright ИМПБ РАН © 2005-2024