Русская версия English version   
Том 2   Выпуск 2   Год 2007
Давидич М.И., Постников Е.Б.

Булевская модель цикла деления клетки дрожжей Schizosaccharomyces pombe: динамика в случае нормальных и возмущенных начальных условий

Математическая биология и биоинформатика. 2007;2(2):377-386.

doi: 10.17537/2007.2.377.

Список литературы

  1. Klipp E, Herwig R, Kowald A, Wierling C, Lehrach H. Systems Biology in Practice: Concepts, Implementation and Application. Wiley-VCH; 2005. doi: 10.1002/3527603603
  2. Hasty J, McMillen D, Isaacs F, Collins JJ. Computational studies of gene regulatory networks: in numero molecular biology. Nat. Rev. Genet. 2001;2:268-279.
  3. Riel NAW. Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. Briefings in Bioinformatics. 2006;7(4):364-374. doi: 10.1093/bib/bbl040
  4. Smolen P, Baxter DA, Byrne JH. Mathematical modeling of gene networks. Neuron. 2000;26:567-580. doi: 10.1016/S0896-6273(00)81194-0
  5. Aguda BD. Modeling the Cell Division Cycle. Lect. Notes Math. 2006;1872:1-22.
  6. Tyson JJ, Chen KC, Novak B. Network dynamics and cell physiology. Nature Rev. Mol. Cell. Biol. 2001;2:908-916.
  7. Braunewell S, Bornholdt S. Superstability of the yeast cell-cycle dynamics: Ensuring causality in the presence of biochemical stochasticity. J. Theor. Biol. 2006;245(4):638-643.
  8. Albert R, Othmer HG. The topology of the regulatory interactions predicts the expression pattern of the Drosophila segment polarity genes. J. Theor. Biol. 2003;223(1):1-18.
  9. Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER. A gene regulatory network model for cell-fate determination during arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell. 2004;16:2923-2939. doi: 10.1105/tpc.104.021725
  10. Sanchez L, Thieffry D. A logical analysis of the drosophila gap-gene system. J. Theor. Biol. 2001;211:115-141.
  11. Genoud T, Metraux JP. Crosstalk in plant cell signaling: Structure and function of the genetic network. Trends Plant Sci. 1999;4:503-507. doi: 10.1016/S1360-1385(99)01498-3
  12. Mendoza L, Thieffry D, Alvarez-Buylla ER. Genetic control of flower morphogenesis in arabidopsis thaliana: a logical analysis. Bioinformatics. 1999;15:593-606. doi: 10.1093/bioinformatics/15.7.593
  13. Thum KE, Shasha DE, Lejay LV, Coruzzi GM. Light- and carbonsignaling pathways. Modeling circuits of interactions. Plant Physiol. 2003;132:440-452. doi: 10.1104/pp.103.022780
  14. Li F, Long T, Lu Y, Quyang Q, Tang C. The yeast cell-cycle network is robustly designed. PNAS. 2004;101(14):4781-4786. doi: 10.1073/pnas.0305937101
  15. Faure A, Naldi A, Chaouiya C, Thieffry D. Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. Bioinformatics. 2006;22(14):124-131. doi: 10.1093/bioinformatics/btl210
  16. Gunsalus KC, Ge H, Schetter AJ, Goldberg DS, Han J-DJ, Hao T, Berriz GF, Bertin N, Huang J, Chuang L-S, Li N, Mani R, Hyman AA, Sönnichsen B, Echeverri CJ, Roth FP, Vidal M, Piano F. Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature. 2005;436(11):861-865. doi: 10.1038/nature03876
  17. Forsburg SL. The best yeast? Trends in Genetics. 1999;15(9):340-344. doi: 10.1016/S0168-9525(99)01798-9
  18. Novak B, Tyson JJ. Modeling the control of DNA replication in fission yeast. PNAS. 1997;94:9147-9152. doi: 10.1073/pnas.94.17.9147
  19. Novak B, Pataki Z, Ciliberto A, Tyson JJ. Mathematical model of the cell division cycle of fission yeast .Chaos. 2001;11(1):277-286. doi: 10.1063/1.1345725
  20. Tyson JJ, Csikasz-Nagy A, Novak B. The dynamics of the cell-cycle regulation. BioEssays. 2002;24:1095-1109. doi: 10.1002/bies.10191
  21. Davidich MI, Bornholt S. Boolean network model predicts cell cycle sequence of fission yeast. Submitted to PLoS ONE. http://www.arxiv.org/abs/0704.2200 (accessed 01 July 2013).
  22. Furnari B, Rhind N, Russell P. Cdc25 Mitotic Inducer Targeted by Chk1 DNA Damage Checkpoint Kinase. Science. 1997;227(5331):1495-1497. doi: 10.1126/science.277.5331.1495
  23. Kim SH, Lin DP, Matsumoto S, Kitazono A, Matsumoto T. Fission Yeast Slp1: An Effector of the Mad2-Dependent Spindle Checkpoint. Science. 1998;279(5353):1045-1047. doi: 10.1126/science.279.5353.1045
  24. Moreno S, Nurse P. Regulation of progression through the G1 phase of the cell cycle by the rum1+ gene. Nature. 1994;367:236-242. doi: 10.1038/367236a0
  25. Chunhui C. Network Dynamics of Budding Yeast Cell Cycle. Diss. B.Sc.: Hong Kong Baptist University; 2005.
Содержание Оригинальная статья
Мат. биол. и биоинф.
2007;2(2):377-386
doi: 10.17537/2007.2.377
опубликована на рус. яз.

Аннотация (рус.)
Аннотация (англ.)
Полный текст (рус., pdf)
Список литературы

 

  Copyright ИМПБ РАН © 2005-2024