References
- Issac B., Singh H., Kaur H., Raghava G.P.S. Locating probable genes using Fourier transform approach. Bioinformatics. 2002;18:196-197. doi: 10.1093/bioinformatics/18.1.196
- Yin C., Yau S.S.-T. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence. J. Theor. Biol. 2007;247:687-694. doi: 10.1016/j.jtbi.2007.03.038
- Wang L., Stein L.D. Localizing triplet periodicity in DNA and cDNA sequences. BMC Bioinformatics. 2010;11:550. doi: 10.1186/1471-2105-11-550
- Marhon S.A., Kremer S.C. Gene prediction based on DNA spectral analysis: a literature review. J. Comput. Biol. 2011;18:639-676. doi: 10.1089/cmb.2010.0184
- Rivard S.R., Mailloux J.G., Beguenane R., Bui H.T. Design of high-performance parallelized gene predictors in MATLAB. BMC Res. Notes. 2012;5:183. doi: 10.1186/1756-0500-5-183
- Sánchez J. 3-base periodicity in coding DNA is affected by intercodon dinucleotides. Bioinformation. 2011;6:327-329. doi: 10.6026/97320630006327
- Shah K., Krishnamachari A. On the origin of the three base periodicity in genomes. Biosystems. 2012;107:142-144. doi: 10.1016/j.biosystems.2011.11.006
- Howe E.D., Song J.S. Categorial spectral analysis of periodicity in human and viral genomes. Nucleic Acids Res. 2013;41:1395-1405. doi: 10.1093/nar/gks1261
- Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27:573-580. doi: 10.1093/nar/27.2.573
- Sokol D., Benson G., Tojeira J. Tandem repeats over the edit distance. Bioinformatics. 2007;23:e30-e35. doi: 10.1093/bioinformatics/btl309
- Stoffer D.S., Tyler D.E., Wendt D.A. The spectral envelope and its applications. Statistical Science. 2000;15:224-253. doi: 10.1214/ss/1009212816
- Chaley Ì., Kutyrkin V. Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences. Math. Biosci. 2008;211:186-204. doi: 10.1016/j.mbs.2007.10.008
- Chaley M.B., Kutyrkin V.A. Structure of proteins and latent periodicity in their genes. Moscow Univ. Biol. Sci. Bull. 2010;65(4):133-135. doi: 10.3103/S0096392510040012
- Chaley M., Kutyrkin V. Profile-Statistical Periodicity of DNA Coding Regions. DNA Res. 2011;18:353-362. doi: 10.1093/dnares/dsr023
- Kutyrkin V.A., Chaley M.B. Spectral-statistical approach to latent profile periodicity recognition in DNA sequences. Mathematical Biology and Bioinformatics. 2014;9(1):33-62 (in Russ.). doi: 10.17537/2014.9.33
- Chaley M., Kutyrkin V. Stochastic model of homogeneous coding and latent periodicity in DNA sequences. J. Theor. Biol. 2016;390:106-116. doi: 10.1016/j.jtbi.2015.11.014
- Jerom K.J. Three Men in a Boat. http://www.bibliomania.com/2/-/frameset.html (accessed 20 October 2015).
- Kanehisa M., Goto S., Sato Y., Furumichi M., Tanabe M. KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res. 2012;40(D1):D109-D114. doi: 10.1093/nar/gkr988
- Kutyrkin V.A., Chaley M.B. Vestnik MGTU im. N.E.Baumana (Herald of the Bauman Moscow State Technical University). 2012;Special Issue 3:146-157 (Natural Sciences Series) (in Russ.).
- Kutyrkin V.A., Chaley M.B. Structural-statistical properties of DNA coding regions. Mathematical Biology and Bioinformatics. 2015;10(1):387-397 (in Russ.). doi: 10.17537/2015.10.387
- Shepelev V., Fedorov A. Advances in the Exon-Intron Database. Briefings in Bioinformatics. 2006;7:178-185. doi: 10.1093/bib/bbl003
- Cramer H. Matematicheskie metody statistiki. Ìoscow; 1975. 648 p. (Translation of: Cramer H. Mathematical methods of statistics. Stockholm; 1946).
- Kutyrkin V.A., Chaley M.B. Vestnik MGTU im. N.E.Baumana (Herald of the Bauman Moscow State Technical University). 2011;Special Issue 2:200-215 (Natural Sciences Series) (in Russ.).
|
|
|
