References
- Lothaire M. Algebraic Combinatorics of Words. Cambridge (UK): Cambridge Univ. Press; 2002. 455 p. doi: 10.1017/CBO9781107326019
- Lind D., Marcus B. An introduction to symbolic dynamics and coding. Cambridge (UK): Cambridge Univ. Press; 1995. 495 p. doi: 10.1017/CBO9780511626302
- Shannon C.E. A mathematical theory of communication. Bell Syst. Techn. Journ. 1948;XXVII(3):379-423. doi: 10.1002/j.1538-7305.1948.tb01338.x
- Shannon C.E. A mathematical theory of communication. Bell Syst. Techn. Journ. 1948;XXVII(4):623-656. doi: 10.1002/j.1538-7305.1948.tb00917.x
- Kolmogoroff A.N. Obscaja teorija dinamiceskih sistem i klassiceskaja mehanika (General theories of dynamical systems in classical mechanics). In: Proceedings of the International Congress of Mathematicians 1954 held at Amsterdam under the auspices of the WISKUNDIG GENOOTSCHAP. Groningen: Erven P. Noordhoff N.V.; Amsterdam: North-Holland Ublishing CO.; 1957. P. 315-333 (in Russ.).
- Khinchin A.Ya. The concept of entropy in the theory of probability. Uspekhi Mat. Nauk. 1953;3(55):3-20 (in Russ.).
- Martin N., Inglend Dzh. Matematicheskaia teoriia entropii. Moscow: Mir; 1988. 350 p. (Translation of: Martin N.F., England J.W. Mathematical Theory of Entropy. 1984. 257 p.).
- Smetanin Y.G., Ulyanov M.V. Reconstruction of a Word from a Finite Set of its Subwords under the unit Shift Hypothesis. I. Reconstruction without for Bidden Words. Cybernetics and Systems Analysis. 2014;50(1):148-156. doi: 10.1007/s10559-014-9602-z
- Wootton J.C., Federhen S. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 1996;266:554-571. doi: 10.1016/S0076-6879(96)66035-2
- Gusev V.D., Kulichkov V.A., Chupakhina O.M.Y. Complexity analysis of genomes. I. Complexity and classification methods of detected structural regularities. Mol. Biol. (Mosk). 1991;25(3):825-834.
- Gusev V.D., Kulichkov V.A., Chupakhina O.M. The Lempel-Ziv complexity and local structure analysis of genomes. Biosystems. 1993;30(1-3):183-200. doi: 10.1016/0303-2647(93)90070-S
- Kislyuk O.S., Borovina T.A., Nazipova N.N. Estimation of Redundancy of Genetic Texts by the High Frequency Component of the l-Gram Graph. Biophysics. 1999;44(4):621-630.
- Troyanskaya O.G., Arbell O., Koren Y., Landau G. M., Bolshoy A. Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity. Bioinformatics. 2002;18(5):679-688. doi: 10.1093/bioinformatics/18.5.679
- Orlov Iu.L. Analiz reguliatornykh genomnykh posledovatel'nostei s pomoshch'iu komp'iuternykh metodov otsenok slozhnosti geneticheskikh tekstov (Analysis of the genomic regulatory sequences using computer techniques bounds for the complexity of genetic texts): Ph. D. Thesis. Novosibirsk; 2004. 148 p. (in Russ.).
- Rudakov K.V., Torshin I.Yu. selection of informative feature values on the basis of solvability criteria in the problem of protein secondary structure recognition. Doklady Mathematics. 2011;84(3):871-874. doi: 10.1134/S1064562411070064
- Smetanin Y., Ul'yanov M. Determining the characteristics of kolmogorov complexity of time series: an approach based on symbolic descriptions. Bisiness informatics. 2013;2(24):49-54 (in Russ.).
- Smetanin Y., Ul'yanov M. Measure of symbolical diversity: Combinatorics on words as an approach to identify generalized characteristics of time series. Bisiness informatics. 2014;3(29):40-48 (in Russ.).
- Kormen T., Leizerson Ch., Rivest R., Shtain K. Algoritmy: postroenie i analiz. Moscow: Izdatel'skii dom «Vil'iams»; 2005. 1296 p. (Translation of: Cormen Thomas H., Leiserson Charles E., Rivest R.L., Stein C. Introduction to Algorithms. 2nd. MIT Press and McGraw-Hill; 2001).
- GenBank. http://www.ncbi.nlm.nih.gov/genbank/ (accessed 20 March 2016).
- European Nucleotide Archive. http://www.ebi.ac.uk/ena (accessed 20 March 2016).
- DNA Data Bank of Japan. http://www.ddbj.nig.ac.jp/ (accessed 20 March 2016).
|
|
|