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Volume 15   Issue 1   Year 2020
Shigaev A.S.

Commentary on the Work of Jimak S.S. et al. “Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on 2H/1H Ratio”

Mathematical Biology & Bioinformatics. 2020;15(1):1-3.

doi: 10.17537/2020.15.1.



  1. Dzhimak S.S., Drobotenko M.I., Basov A.A., Svidlov A.A., Baryshev M.G. Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on 2H/1H Ratio. Math. Biol. Bioinf. 2019;14:612–624. doi: 10.17537/2019.14.612
  2. Bockelmann U., Thomen Ph., Essevaz-Roulet B., Viasnoff V., Heslot F. Unzipping DNA with optical tweezers: High sequence sensitivity and force flips. Biophysical Journal. 2002;82:1537–1553. doi: 10.1016/S0006-3495(02)75506-9
  3. Peyrard M. Using DNA to probe nonlinear localized excitations? Europhysics Letters. 1998;44:271–277. doi: 10.1209/epl/i1998-00469-9
  4. Cocco S., Monasson R., Marko J.F. Force and kinetic barriers to initiation of DNA unzipping. Physical Review E. 2002;65. Article No. 041907. doi: 10.1103/PhysRevE.65.041907
  5. Krautbauer R., Rief M., Gaub H.E. Unzipping DNA Oligomers. Nano Letters. 2003;3:493–496. doi: 10.1021/nl034049p
  6. Shigaev A.S., Ponomarev O.A., Lakhno V.D. Theoretical and Experimental Investigations of DNA Open States. Math. Biol. Bioinf. 2013;8:553-664. doi: 10.17537/2013.8.553
  7. Leijon M., Graslund A. Effects of sequence and length on imino proton exchange and base pair opening kinetics in DNA oligonucleotide duplexes. Nucleic Acids Research. 1992;20:5339–5343. doi: 10.1093/nar/20.20.5339
  8. Peyrard M. Nonlinear dynamics and statistical physics of DNA. Nonlinearity. 2004;17:R1–R40. doi: 10.1088/0951-7715/17/2/R01
Table of Contents Original Article
Math. Biol. Bioinf.
doi: 10.17537/2020.15.1
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)


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