Russian version English version
About the Journal
Editorial Board
Instructions for Authors
Information for Readers and Authors
Current Issue
Archive
Contact Us
Search

Send manuscript
 


Volume 17   Issue 1   Year 2022
References

  1. Schalk A.F., Hawn M.C. An apparently new respiratory disease of baby chicks. J. Am. Vet. Med. Assoc. 1931;78:413–423.
  2. Shchelkanov M.Yu., Popova A.Yu., Dedkov V.G., Akimkin V.G., Maleev V.V. History of investigation and current classification of coronaviruses (Nidovirales: Coronaviridae). Russian Journal of Infection and Immunity. 2020;10(2):221–246 (in Russ.). doi: 10.15789/2220-7619-HOI-1412
  3. Khaitovich A.B. Coronavirus (taxonomy, virus structure). Crimean Journal of Experimental and Clinical Medicine. 2020;10(3):69–81. doi: 10.37279/2224-6444-2020-10-3-69-81
  4. Lvov D.K., Alkhovsky S.V. Source of the COVID-19 pandemic: ecology and genetics of coronaviruses (Betacoronavirus: Coronaviridae) SARS-CoV, SARS-CoV-2 (subgenus Sarbecovirus), and MERS-CoV (subgenus Merbecovirus). Problems of Virology. 2020;65(2):62–70 (in Russ.). doi: 10.36233/0507-4088-2020-65-2-62-70
  5. Lvov D.K., Alkhovsky S.V., Kolobukhina L.V., Burtseva E.I. Etiology of epidemic outbreaks COVID-19 in Wuhan, Hubei province, Chinese People Republic associated with 2019-nCoV (Nidovirales, Coronaviridae, Coronavirinae, Betacoronavirus, Subgenus Sarbecovirus): lessons of SARS-CoV outbreak. Problems of Virology. 2020;65(1):6–15 (in Russ.). doi: 10.36233/0507-4088-2020-65-1-6-15
  6. Virus Taxonomy. Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses. Eds. King A.M.Q., Adams M.J., Carstens E.B., Lefkowitz E.J. Elsevier Academic Press, 2011. 1338 p.
  7. Bukhari K., Mulley G., Gulyaeva A.A., Zhao L., Shu G., Jiang J., Neuman B.W. Description and initial characterization of metatranscriptomic nidovirus-like genomes from the proposed new family Abyssoviridae, and from a sister group to the Coronavirinae, the proposed genus Alphaletovirus. Virology. 2018;524:160–171. doi: 10.1016/j.virol.2018.08.010
  8. Ziebuhr J., Baric R.S., Baker S., de Groot R.J., Drosten C., Gulyaeva A., Haagmans B.L., Neuman B.W., Perlman S., Poon L.L.M., Sola I., Gorbalenya A.E. Reorganization of the family Coronaviridae into two families, Coronaviridae (including the current subfamily Coronavirinae and the new subfamily Letovirinae) and the new family Tobaniviridae (accommodating the current subfamily Torovirinae and three other subfamilies), revision of the genus rank structure and introduction of a new subgenus rank: Proposal 2017.013S (08.08.2018) for International Committee on Taxonomy of Viruses.
  9. Neuman B.W., Adair B.D., Yoshioka C., Quispe J.D., Kuhn G.O.P., Milligan R.A., Yeager M., Buchmeier M.J. Supramolecular architecture of severe acute respiratory syndrome coronavirus revealed by electron cryomicroscopy. J. Virol. 2006;80(16):7918–7928. doi: 10.1128/JVI.00645-06
  10. Virology: principles and applications. Eds. J. Carter, V. Saunders. Chichester, England: John Wiley & Sons Ltd, 2007. 358 p. doi: 10.1093/tropej/fmn001
  11. Chen Y., Liu Q., Guo D. Emerging coronaviruses: Genome structure, replication, and pathogenesis. J. Med. Virol. 2020;92:418–423. doi: 10.1002/jmv.25681
  12. Μa Y., Wu L., Shaw N., Gao Y., Wang J., Sun Y., Lou Z., Yan L., Zhang R., Rao Z. Structural basis and functional analysis of the SARS coronavirus nspl4-nspl0 complex. PNAS. 2015;112(30):9436–9441. doi: 10.1073/pnas.1508686112
  13. Cavanagh D., Mawditt Κ., Adzharet A., Gough R.E., Picault J.P., Naylor C.J., Haydon D., Shaw K., Britton P. Does IBV change slowly despite the capacity of the spike protein to vary greatly? Adv. Exp. Med. Biol. 1998;440:729–734. doi: 10.1007/978-1-4615-5331-1_94
  14. Pyrc Κ., Dijkman R., Deng L., Jebbink M.F., Ross H.A., Berkhout B., der Hoek L. Mosaic structure of human coronavirus NL63, one thousand years of evolution. J. Mol. Biol. 2006;364:964–973. doi: 10.1016/j.jmb.2006.09.074
  15. Su S., Wong G., Shi W., Liu J., Lai A.C.K., Zhou J., Liu W., Bi Y., Gao G.F. Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses. Trends in Microbiology. 2016;24(6):490–502. doi: 10.1016/j.tim.2016.03.003
  16. Edara V-V., Pinsky B.A., Suthar M.S., Lai L., Davis-Gardner M.E., Floyd K., Flowers M.W., Wrammert J., Hussaini L., Rose Ciric C. et al. Infection and vaccine-induced neutralizing-antibody responses to the SARS-CoV-2 B.1.617 Variants. N. Engl. J. Med. 2021;385(7):664–666. doi: 10.1056/NEJMc2107799
  17. Long S.W., Olsen R.J., Christensen P.A., Subedi S., Olson R., Davis J.J., Ojeda Saavedra M., Yerramilli P., Pruitt L., Reppond K. Sequence Analysis of 20,453 Severe Acute Respiratory Syndrome coronavirus 2 genomes from the Houston metropolitan area identifies the emergence and widespread distribution of multiple isolates of all major variants of concern. Am. J. Pathol. 2021;191(6):983–992. doi: 10.1016/j.ajpath.2021.03.004
  18. Borisova N.I., Kotov I.A., Kolesnikov A.A., Kaptelova V.V., Speranskaya A.S., Kondrasheva L.Yu., Tivanova E.V., Khafizov K.F., Akimkin V.G. Monitoring the spread of the SARS-CoV-2 (Coronaviridae: Coronavirinae: Betacoronavirus; Sarbecovirus) variants in the Moscow region using targeted high-throughput sequencing. Problems of Virology. 2021;66(4):269–278. doi: 10.36233/0507-4088-72
  19. Chaley M.B., Tyulko Zh.S., Kutyrkin V.A. Flavivirus Species Recognition Based On the Polyprotein Coding Sequences. Mathematical Biology and Bioinformatics. 2019;14(2):533–542. doi: 10.17537/2019.14.533
  20. Chaley M.B., Tyulko Zh.S., Kutyrkin V.A. Coding Structure for the ORF1ab, S, M and N Coronavirus Genes. Mathematical Biology and Bioinformatics. 2020;15(2):441–454. doi: 10.17537/2020.15.441
  21. Lai M.M.C. Recombination in large RNA viruses: Coronaviruses. Seminars in Virology. 1996;7(6):381–388. doi: 10.1006/smvy.1996.0046
  22. Tao Y., Shi M., Chommanard C., Queen K., Zhang J., Markotter W., Kuzmin I.V., Holmes E.C., Tong S. Surveillance of bat coronaviruses in Kenya identifies relatives of human coronaviruses NL63 and 229E and their recombination history. Journal of Virology. 2017;91(5):e01953–16. doi: 10.1128/JVI.01953-16
  23. Luk H.K.H., Li X., Fung J., Lau S.K.P., Woo P.C.Y. Molecular epidemiology, evolution and phylogeny of SARS coronavirus. Infection, Genetics and Evolution. 2019;71:21–30. doi: 10.1016/j.meegid.2019.03.001
  24. GenBank. https://ftp.ncbi.nlm.nih.gov/genbank/ (accessed 20.12.2021).
Table of Contents
Original Article
Chaley M.B., Kutyrkin V.A. Coronavirus Genus Recognition Based on Prototype Virus Variants. Ìàthematical biology and bioinformatics. 2022;17(1):10-27. doi: 10.17537/2022.17.10
(published in Russian)

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References

 
  Copyright IMPB RAS © 2005-2025