Список литературы
- Dubois A., Francois C., Descamps V., Fournier C., Wychowski C., Dubuisson J., Castelain S., Duverlie G. Enhanced anti-HCV activity of interferon alpha 17 subtype. Virology. 2009;6:70. doi: 10.1186/1743-422X-6-70
- Bychkov V.A., Ryazantseva N.V., Novitsky V.V. Analysis of the combined effect of polymorphisms interferon genes OAS1, OAS3, PKR, IFNA17 and IFNG in susceptibility to chronic viral hepatitis C. Bulletin of Siberian medicine. 2011;3:19–23.
- GenBank: Homo sapiens interferon alpha 17 (IFNA17), mRNA. http://www.ncbi.nlm.nih.gov/nuccore/NM_021268 (accessed December 23, 2016).
- Englander S.W., Kallenbach N.R., Heeger A.J., Krumhansl J.A., Litwin A. Nature of the open state in DNA structure. Proc. Natl. Acad. Sci. USA. 1980;77:7222–7226. doi: 10.1073/pnas.77.12.7222
- Shigaev A.S., Ponomarev O.A., Lakhno V.D. Theoretical and Experimental Investigations of DNA Open States. Mathematical biology and bioinformatics. 2013;8:553–664. doi: 10.17537/2013.8.553
- Scott A. Encyclopedia of Nonlinear Science. New York: Frances and Taylor; 2005.
- Ohyama T. DNA Conformation and Transcription. New York: Springer–Science Business Media; 2005. doi: 10.1007/0-387-29148-2
- Ivancevic V.G., Ivancevic T.T. Sine-Gordon Solitons, Kinks and Breathers as Physical Models of Nonlinear Excitations in Living Cellular Structures. arXiv. 2013. 1305.0613v1 [q-bio.OT].
- Sanchez D.S., Qu H., Bulla D., Zocchi G. DNA kinks and bubbles: temperature dependence of the elastic energy of sharply bent 10-nm-size DNA molecules. Phys. Rev. E. Stat. Nonlin. Soft. Matter. Phys. 2013;87(2):022710. doi: 10.1103/PhysRevE.87.022710
- Peyrard M., Bishop A.R. Statistical Mechanics of a Nonlinear Model for DNA Denaturation. Phys. Rev. Lett. 1989;62:2755–2758. doi: 10.1103/PhysRevLett.62.2755
- Yomosa S. Solitary excitations in deoxyribonucleic acid (DNA) double helices. Phys. Rev. A. 1984;30:474–480. doi: 10.1103/PhysRevA.30.474
- Takeno S., Homma S.A. Coupled Base-Rotator Model for Structure and Dynamics of DNA. Prog. Theor. Phys. 1984;72:679–693. doi: 10.1143/PTP.72.679
- Yakushevich L.V. Nonlinear DNA dynamics: a new model. Phys. Letters A. 1989;136:413–417. doi: 10.1016/0375-9601(89)90425-8
- Barbi M., Cocco S., Peyrard M. Helicoidal model for DNA opening. Phys. Letters A. 1999;253:358–369. doi: 10.1016/S0375-9601(99)00059-6
- Yakushevich L.V. Nonlinear Physics of DNA. New York: Wiley–Verlag; 2004. 190 p. doi: 10.1002/3527603700
- Vasumathi V., Daniel M. Base-pair opening and bubble transport in a DNA double helix induced by a protein molecule in a viscous medium. Phys. Rev. E. Stat. Nonlin. Soft. Matter. Phys. 2009;80:061904. doi: 10.1103/PhysRevE.80.061904
- Daniel M., Vanitha M. Bubble solitons in an inhomogeneous, helical DNA molecular chain with flexible strands. Phys. Rev. E. Stat. Nonlin. Soft. Matter. Phys. 2011;84:031928. doi: 10.1103/PhysRevE.84.031928
- Di Garbo A. Longitudinal displacements of base pairs in DNA and effects on the dynamics of nonlinear excitations. Math. Biosci. 2013;245:70–75. doi: 10.1016/j.mbs.2013.03.010
- Di Garbo A. Anharmonic longitudinal motion of bases and dynamics of nonlinear excitation in DNA. Biophys. Chem. 2016;208:76–83. doi: 10.1016/j.bpc.2015.09.006
- Shapovalov A.V., Krasnobaeva L.A. The solitons of the sine-Gordon. Tomsk: Tomsk State University; 2009.
- Krasnobaeva L.A., Yakushevich L.V. Rotational dynamics of bases in the gene coding interferon alpha 17 (IFNA17). Journal of Bioinformatics and Computational Biology. 2015;13:1540002. doi: 10.1142/S0219720015400028
- Yakushevich L.V., Krasnobaeva L.A., Shapovalov A.V., Quintero N.R. One- and Two-Soliton Solutions of the Sine-Gordon Equation as Applied to DNA. Biophysics. 2005;50:450–455.
- Yakushevich L.V., Krasnobaeva L.A. Forced Oscillations of DNA bases. Biophysics. 2016;61:286–296. doi: 10.1134/S000635091602024X
- McLaughlin D.W., Scott A.C. Perturbation analysis of fluxion dynamics. Phys. Rev. A. 1978;18:1652. doi: 10.1103/PhysRevA.18.1652
- Yakushevich L.V., Krasnobaeva L.A. Effects of dissipation and external fields on the dynamics of conformational distortions in DNA. Biophysics. 2007;52:237–243. doi: 10.1134/S0006350907020066
- Yakushevich L.V., Krasnobaeva L.A. Peculiar Features of Kink Dynamics in Inhomogeneous DNA. Biophysics. 2008;53:36–41. doi: 10.1134/S0006350908010041
- Yakushevich L.V., Krasnobaeva L.A. A new approach to studies of non-linear dynamics of kinks activated in inhomogeneous polynucleotide chains. Int. J. Nonlin. Mech. 2008;43:1074–1081. doi: 10.1016/j.ijnonlinmec.2008.05.003
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