Anisimov D.S., Podlesnykh S.V., Kolosova E.A., Shcherbakov D.N., Petrova V.D., Johnston S.A., Lazarev A.F., Oskorbin N.N., Shapoval A.I., Ryazanov M.A.
Projection to Latent Structures as a Strategy for Peptides Microarray Data Analysis
Mathematical Biology & Bioinformatics. 2017;12(2):435-445.
doi: 10.17537/2017.12.435.
References
- Osipova T.V., Ryabykh T.P., Baryshnikov A.Yu. Diagnostic microchips: application in oncology. Russian Journal of Biotherapy. 2006;5(3):72-81 (in Russ.
- Nikitin Ye.A., Sudarikiv A.B., Baranova A.V. Microarrays: a new era in development of oncohematology. Oncohematology. 2008;1-2:6-12 (in Russ.).
- Kozhevnikova O.S., Martyshchenko M.K., Genaev M.K., Korbolina E.E., Muraleva N.A., Kolosova N.G., Orlov Y.L.. Rat-DNA: A database on microarray studies of rats bearing genes associated with age-related diseases. Russian Journal of Genetics: Applied Research. 2013;3(3):163-170. doi: 10.1134/S2079059713030076
- Osipova T.V., Ryabyh T.P., Dementieva E.I., Dariy E.L., Rubina A.Yu., Zasedatelev A.S., Blokhin D.Yu., Baryshnikov A.Yu., Mirzabekov A.D. Protein microchips used in diagnostics of malignant formations. Biochip development towards prostate specific antigen. Russian Journal of Biotherapy. 2003;2(3):24-30 (in Russ.).
- Nasedkina T.V. Use of biological microchips in oncohematology. Oncohematology. 2006;1-2:25-37 (in Russ.).
- Kitaeva N.V., Frigo N.V., Volkov I.A., Likhareva V.V. Biomicrochips and aspects of their application in dermatovenerology. Vestnik dermatologii i venerologii. 2009;6:33-45 (in Russ.).
- Hall J. The microarray revolution: how one chip is changing the face of science. Harvard Science Rev. 2002:82-85.
- Jain K.K. The role of protein chip technology in molecular diagnostics. IVD Technology. 2002;8:49-56.
- Kijanka G., Murphy D. Protein arrays as tools for serum autoantibody marker discovery in cancer. J. Proteomics. 2009;72(6):936-944. doi: 10.1016/j.jprot.2009.02.006
- Podlesnykh S.V., Kolosova E.A., Shcherbakov D.N., Shaidurov A.A., Anisimov D.S., Ryazanov M.A., Johnston S.A., Shoikhet Ya.N., Petrova V.D., Lazarev A.F., Chapoval A.I. Interaction of serum antibodies from breast cancer patients with synthetic peptides. Bulletin of Experimental Biology and Medicine. 2016;161(6):816-820. doi: 10.1007/s10517-016-3519-7
- Stafford P., Brun M. Three methods for optimization of cross-laboratory and cross-platform microarray expression data. Nucleic Acids Res. 2007;35(10):1-16. doi: 10.1093/nar/gkl1133
- Rubina A.Y., Dementieva E.I., Stomakhin A.A., Darii E.L., Pankov S.V., Barsky V.E., Ivanov S.M., Konovalova E.V., Mirzabekov A.D. Hydrogel – based protein microchips: manufacturing, properties, and applications. BioTechniques. 2003;34:1008-1022.
- Hardiman G. Microarray platforms -- comparisons and contrasts. Pharmacogenomics. 2004;5(5):487-502. doi: 10.1517/14622416.5.5.487
- Lacombe J., Mangé A., Solassol J. Use of autoantibodies to detect the onset of breast cancer. Journal of Immunology Research. 2014:8.
- Blohm D.H., Guiseppi-Elie A. New developments in microarray technology. Curr. Opin. Biotechnol. 2001;12:41-47. doi: 10.1016/S0958-1669(00)00175-0
- Chapoval A.I., Legutki J.B., Stafford P., Trebukhov A.V., Johnston S.A., Shoykhet Ya.N., Lazarev A.F. Immunosignature – peptide microarray for diagnostic of cancer and other diseases. Russian Journal of Oncology. 2014;4:6-11 (in Russ.).
- Legutki J.B., Zhao Z.G., Greving M., Woodbury N., Johnston S.A., Stafford P. Scalable high-density peptide arrays for comprehensive health monitoring. Nature Communications. 2014;5. Article No. 4785. doi: 10.1038/ncomms5785
- Anisimov D.S., Ryazanov M.A., Chapoval A.I. Approaches for large volume data analysis obtained utilizing peptide microarrays. Proceedings of the Altai State University. 2015;1/2(85):77-80 (in Russ.).
- Cretich M., Chiari M. Peptide Microarrays: Methods and Protocols. Humana Press. 2009. doi: 10.1007/978-1-60327-394-7
- Esbensen K. Analiz mnogomernykh dannykh. Izbrannye glavy. Barnaul: The Altai State University Press, 2003. 157 p. (Translation of: Esbensen K.H. Multivariate Data Analysis: In Practice. CAMO, 2000. 600 p.).
- Student. The probable error of a mean. Biometrika. 1908;6(1):1-25. doi: 10.1093/biomet/6.1.1
- Mann H.B., Whitney D.R. On a test of whether one of two random variables is stochastically larger than the other. Annals of Mathematical Statistics. 1947;18:50-60. doi: 10.1214/aoms/1177730491
- Lilliefors H. On the Kolmogorov–Smirnov test for normality with mean and variance unknown. Journal of the American Statistical Association. 1967;62(318):399-402. doi: 10.1080/01621459.1967.10482916
- Maksimov A.V., Oskorbin N.M. Mnogopol'zovatel'skie informatsionnye sistemy: osnovy teorii i metody issledovaniia (Multi-user Information Systems: the Fundamentals of the Theory and Methods of Research). Barnaul: The Altai State University Press, 2013. 264 p. (in Russ.).
|
|
|
